On 3 May 2014 an article appeared in Science News Magazine about how antibiotic drugs work. This analysis is an example of a possible abduction outline from this article.

Initial Observation

An initial observation is that antibiotic drugs kill cells.

Preliminary Conditions

There are two theories posed to explain how antibiotics kill cells:

A1: Targeted Action. The drugs target specific molecules that are important to the cell. When those important molecules are destroyed the cell dies.
A2: Superoxide Theory. The drugs disrupt the normal functioning of the cell causing production of reactive oxygen-based radicals that kill the cell.

Assume these theories have merit, satisfying at least half of the criteria for a scientific theory (it will be required to show this starting with the next set of examples). Also, each of the theories could explain the initial observation (as described above).

Data

D1: Penicillin kills by specifically attacking cell walls.
D2: Kanamyrin kills by specifically attacking protein assembly.
D3: Ciprofloxacin kills by specifically attacking DNA.
D4: Disruption of DNA by guinolones initiates responses to fix the DNA which creates superoxides and interferes with iron regulation.
D5: Kananycin and penicillin/ampicillin triggered a flare of fluorescence, indicating a cascade of damage similar to quindones.
D6: Using antibiotics increased the activity of a coenzyme responsible for energy production.
D7: Antibiotics engage genes that control protein and DNA repair.
D8: Mutant bacteria with no functional SOS response were more vulnerable to the antibiotics.
D9: Imlay couldn't detect a boost in free iron.
D10: Drugs are still lethal without oxygen.
D11: Leprosy drugs spark the formation of reactive oxygen.
D12: Reactive oxygen can annihilate tuberculosis-causing microbes.

Evaluation Chart

 Targeted ActionSuperoxide
D1yesno
D2yesno
D3yesno
D4noyes
D5noyes
D6noyes
D7noyes
D8yesno
D9yesno
D10yesno
D11noyes
D12noyes

Result

From this data (Targeted Action - 6, Superoxide - 6), it would seem that we need more data to decide which is the best theory!